Publications

JT Borenstein, AM Clark, M. Ebrahimkhani, I. Fox, L. Griffith, W. Inman, D. Lauffenburger, T. Nguyen, R. Prantil-Baun, D. Stoltz, D. Taylor, T. Ulrich, C. Venkateswaran, R. Venkataramanan, A. Wells, C. Young (2013). All-Human Microphysical Model of Metastasis Therapy. Stem Cell Research and Therapy.
PMID: 24565274

Fletcher, S.P., Chin, D.J., Cheng, D.T., Ravindran, P., Bitter, H., Gruenbaum, L., Cote, P.J., Ma, H., Klumpp, K., and Menne, S. (2013). Identification of an intrahepatic transcriptional signature associated with self-limiting infection in the woodchuck model of hepatitis B. Hepatology.
PMID: 22806943

Kirouac, D. C., Saez-Rodriguez, J., Swantek, J., Burke, J. M., Lauffenburger, D. A., and Sorger, P. L. (2012). Creating and analyzing pathway and protein interaction compendia for modelling signal transduction networks. BMC Systems Biology.
PMID:22548703

C. L. Young, D. Raden, J. Caplan, K. Czymmek, A. S. Robinson (2012). Cassettes Designed for Live-Cell Imaging of Proteins and High Resolution Techniques in Yeast. Yeast.
http://www.ncbi.nlm.nih.gov/pubmed/?term=Cassettes+Designed+for+Live-Cell+Imaging+of+Proteins+and+High+Resolution+Techniques+in+Yeast

Baum, P., Schmid, R., Ittrich, C., Rust, W., Fundel-Clemens, K., Siewert, S, Baur, M., Mara, L., Gruenbaum, L.M., Eils, R., Kontermann, R., Roth, G., Gantner, F., Schnapp, A., Park, J., Weith, A., Quast, K. and Mennerich, D. (2010). Phenocopy – a strategy to qualify chemical compounds during Hit-to_Lead and/or Lead Optimization. PLOS One.
PMID: 21170314

Kim, K. A., Spencer, S. L., Albeck, J. G., Burke, J.M., Sorger, P.K., Gaudet, S., Kim do, H. (2010). Systematic calibration of a cell signaling network model. BMC Bioinformatics.
PMID:19363473

Apgar, J. F. Witmer, D. K., White, F. M., and Tidor, B. (2010). Sloppy models, parameter uncertainty, and the role of experimental design.. Molecular BioSystems.
PMID:20556289

Apgar, J. F. Witmer, D. K., White, F. M., and Tidor, B. (2010). Sloppy models, parameter uncertainty, and the role of experimental design.. Molecular BioSystems.
PMID:20556289

Wilkins, AK, Tidor, B, White, J, Barton, PI (2009). Sensitivity analysis for oscillating dynamical systems. SIAM J Sci Comput.
PMID: 23296349

Spencer, S. L., Gaudet, S., Albeck, J. G., Burke, J. M., and Sorger, P. K. (2009). Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis. Nature.
PMID:19363473

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